Tools
The AGP is active in the design and development of research oriented software and applications. The applications and platforms the AGP is taking part in are listed below.
HLA-net
HLA-net is an European network of the HLA diversity for histocompatibility, clinical transplantation, epidemiology and population genetics.
More info on hla-net.eu
SPLATCHE 2
SPatiaL And Temporal Coalescent in a Heterogeneous Environment, Version 2.
More info on splatche.com
SELECTOR
A program to simulate lineages under selection in a spatially-explicit population framework, written in C++ and running under MS windows and linux.
More info on selector v1.1
How to cite SELECTOR
Currat M, Gerbault P, Di D, Nunes JM, Sanchez-Mazas A (2015) Forward-in-Time, Spatially Explicit Modeling Software to Simulate Genetic Lineages Under Selection, Evolutionary Bioinformatics 2015:Suppl. 2 27-39
User Manual
Download the User Manual
Descriptive article
Download the Article
SELECTOR 1.1
- Download the Windows version
- Download the Linux version (64b)
Example datasets
- Download Basic example files
- Download ABC example files
Bug correction
- 23.02.2017 > Ver 1.1 - Numbers of selection models FDS and DPS were reversed: corrected! (Thanks to Diego Salazar Tortosa)
Aknowledgements
Swiss SNF projects 1003A-144180 and 31003A_156853